STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_65890Sphingolipid delta-4 desaturase. (365 aa)    
Predicted Functional Partners:
Gasu_07380
3-dehydrosphinganine reductase.
   
 
 0.945
Gasu_30160
Longevity assurance protein LAG1.
    
 0.936
Gasu_06460
Phosphatidic acid phosphatase type 2B-like protein.
     
 0.905
Gasu_18760
Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).
 
    
 0.899
Gasu_24950
Serine palmitoyltransferase.
   
  
 0.717
Gasu_05920
Stearoyl-CoA desaturase (Delta-9 desaturase).
      
 0.597
Gasu_30970
Serine palmitoyltransferase.
   
  
 0.590
Gasu_10510
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.525
Gasu_53620
Hydroxymethylglutaryl-CoA lyase.
 
      0.477
Gasu_55070
PAP2_C domain-containing protein.
   
  
 0.462
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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