STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_134003-methyl-2-oxobutanoate hydroxymethyltransferase. (327 aa)    
Predicted Functional Partners:
Gasu_09660
Pantoate--beta-alanine ligase isoform 2.
  
 0.998
Gasu_53750
Dihydroxy-acid dehydratase.
    
 0.954
Gasu_09410
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
    
 0.943
Gasu_03710
Branched-chain amino acid aminotransferase.
    
 0.943
Gasu_26000
Anthranilate synthase component II.
   
  
 0.640
Gasu_33750
Indole-3-glycerol phosphate synthase.
   
  
 0.640
Gasu_51560
GMP synthase (Glutamine-hydrolysing).
     
 0.631
Gasu_38980
Glutamine amidotransferase, class I isoform 1.
     
 0.630
Gasu_03410
Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.
     
 0.630
Gasu_22790
Pantothenate kinase isoform 1.
   
  
 0.616
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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