STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gasu_00700Protein geranylgeranyltransferase type II. (323 aa)    
Predicted Functional Partners:
Gasu_31590
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.959
Gasu_18670
GDP dissociation inhibitor.
   
 0.878
Gasu_01430
Rab family, other.
    
 0.658
Gasu_50230
Rab family, other.
    
 0.653
Gasu_07800
Uncharacterized protein.
    
 0.638
Gasu_14400
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
    
 0.564
Gasu_47510
Rab family, other.
    
 0.562
Gasu_37550
Light-harvesting complex protein.
    
 0.532
Gasu_32930
Synaptobrevin homolog YKT6; Belongs to the synaptobrevin family.
    
 
 0.532
Gasu_11630
Light-harvesting complex protein.
    
 0.532
Your Current Organism:
Galdieria sulphuraria
NCBI taxonomy Id: 130081
Other names: G. sulphuraria, SAG 17.91
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