STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaFBeta-ketoadipyl-CoA thiolase; Catalyzes thiolytic cleavage of beta-ketoadipyl-CoA to succinyl-CoA and acetyl-CoA. (401 aa)    
Predicted Functional Partners:
catJ
3-oxoadipate CoA-transferase subunit B; Belongs to the 3-oxoacid CoA-transferase subunit B family.
 
 
 0.963
catI
3-oxoadipate CoA-transferase subunit A; Catalyzes the CoA transfer from succinate to 3-oxoadipate (beta-ketoadipate).
 
 
 0.962
ehhadh1
Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.955
fadB
Fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.949
PKB_1920
Putative 3-hydroxyacyl-CoA dehydrogenase.
 
 0.948
pcaI
3-oxoadipate CoA-transferase subunit A.
  
 
 0.935
pcaJ
3-oxoadipate CoA-transferase subunit B.
  
 
 0.933
fada9
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.917
paaj3
3-oxoadipyl-CoA/3-oxo-5, 6-dehydrosuberyl-CoAthiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.914
PKB_3133
Putative acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.913
Your Current Organism:
Pseudomonas knackmussii
NCBI taxonomy Id: 1301098
Other names: P. knackmussii B13, Pseudomonas knackmussii B13, Pseudomonas knackmussii LMG 23759, Pseudomonas sp. (strain B13), Pseudomonas sp. B13, Pseudomonas sp. DSM 6978
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