STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catJ3-oxoadipate CoA-transferase subunit B; Belongs to the 3-oxoacid CoA-transferase subunit B family. (260 aa)    
Predicted Functional Partners:
catI
3-oxoadipate CoA-transferase subunit A; Catalyzes the CoA transfer from succinate to 3-oxoadipate (beta-ketoadipate).
 0.999
PKB_4265
Acyl CoA:acetate/3-ketoacid CoA transferase,alpha subunit.
 
 0.993
pcaF
Beta-ketoadipyl-CoA thiolase; Catalyzes thiolytic cleavage of beta-ketoadipyl-CoA to succinyl-CoA and acetyl-CoA.
 
 
 0.963
PKB_4264
Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
  
  
 
0.921
catD
3-oxoadipate enol-lactonase 2.
 
 
 0.909
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.779
pcaI
3-oxoadipate CoA-transferase subunit A.
  
 
 0.779
PKB_4266
Hypothetical protein.
  
 
 0.769
paaj1
3-oxoadipyl-CoA/3-oxo-5, 6-dehydrosuberyl-CoAthiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.682
PKB_0335
Amidase.
    
  0.659
Your Current Organism:
Pseudomonas knackmussii
NCBI taxonomy Id: 1301098
Other names: P. knackmussii B13, Pseudomonas knackmussii B13, Pseudomonas knackmussii LMG 23759, Pseudomonas sp. (strain B13), Pseudomonas sp. B13, Pseudomonas sp. DSM 6978
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