STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clcd3Carboxymethylenebutenolidase. (236 aa)    
Predicted Functional Partners:
clce3
Maleylacetate reductase.
  
  
 0.799
PKB_3624
UPF0065 protein in clcB-clcD intergenic region.
       0.705
PKB_4932
Hypothetical protein.
  
  
 0.580
PKB_3627
AraC family transcriptional regulator.
 
     0.574
clca3
Chlorocatechol 1,2-dioxygenase.
 
  
 0.524
clcb3
Chloromuconate cycloisomerase.
 
  
 0.508
PKB_3254
Esterase.
 
  
 0.464
PKB_3602
Esterase.
 
  
 0.464
clcr3
HTH-type transcriptional regulator ClcR.
 
     0.404
Your Current Organism:
Pseudomonas knackmussii
NCBI taxonomy Id: 1301098
Other names: P. knackmussii B13, Pseudomonas knackmussii B13, Pseudomonas knackmussii LMG 23759, Pseudomonas sp. (strain B13), Pseudomonas sp. B13, Pseudomonas sp. DSM 6978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.