STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRK48465.1Hypothetical protein. (287 aa)    
Predicted Functional Partners:
KRK48468.1
Hypothetical protein.
  
    0.663
KRK48466.1
AgrC domain-containing protein.
       0.636
KRK48467.1
ABC transporter ATP-binding protein.
  
 
  0.573
KRK48469.1
ABC transporter ATP-binding protein.
  
 
  0.573
KRK48695.1
Glycoside hydrolase family protein.
    
   0.536
KRK48709.1
N-acetylmuramoyl-L-alanine amidase family 2 protein.
    
   0.536
KRK48470.1
Hypothetical protein.
       0.481
KRK48471.1
Hypothetical protein.
       0.481
Your Current Organism:
Lactobacillus kimchicus
NCBI taxonomy Id: 1302272
Other names: L. kimchicus JCM 15530, Lactobacillus kimchicus DCY51, Lactobacillus kimchicus JCM 15530, Lactobacillus sp. DCY51
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