STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001592145_01025Unannotated protein. (503 aa)    
Predicted Functional Partners:
GCA_001592145_01042
Unannotated protein.
 
 
 0.889
GCA_001592145_01057
Unannotated protein.
 
 
 0.889
GCA_001592145_01038
Unannotated protein.
 
 
 0.886
GCA_001592145_01026
Unannotated protein.
  
 
  0.837
GCA_001592145_01028
Unannotated protein.
  
    0.802
GCA_001592145_01027
Unannotated protein.
       0.773
GCA_001592145_01034
Unannotated protein.
 
 
 0.758
GCA_001592145_01029
Unannotated protein.
 
  
 0.717
GCA_001592145_01023
Unannotated protein.
 
    0.653
GCA_001592145_01214
Unannotated protein.
 
 
 0.618
Your Current Organism:
Xylanimicrobium pachnodae
NCBI taxonomy Id: 1305855
Other names: X. pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae JCM 13526, Xylanimicrobium pachnodae JCM 13526 = NBRC 107786, Xylanimicrobium pachnodae NBRC 107786, Xylanimicrobium pachnodae NBRC 107786 = JCM 13526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.