STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO16148.1Polyketide cyclase / dehydrase and lipid transport. (135 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
     
 0.776
ALO17240.1
Iron-sulfur cluster repair di-iron protein.
 
     0.691
ALO14835.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
     0.650
yddE
Putative isomerase YddE.
       0.645
ALO16655.1
Outer membrane protein assembly complex, YaeT protein.
  
     0.626
ALO14724.1
Hypothetical protein.
 
     0.605
ALO15515.1
Cell wall biosynthesis protein ScdA; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
 
     0.569
ALO16146.1
Nucleoside triphosphate pyrophosphohydrolase.
       0.564
ALO14026.1
Chromosome segregation protein SMC.
  
     0.554
ALO15156.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Salinivirga cyanobacteriivorans
NCBI taxonomy Id: 1307839
Other names: DSM 27204, JCM 31231, KCTC 15528, S. cyanobacteriivorans, Salinivirga cyanobacteriivorans Ben Hania et al. 2017, bacterium L21-Spi-D4, strain L21-Spi-D4
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