STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnjRibonuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (574 aa)    
Predicted Functional Partners:
dapA
Dihydrodipicolinate synthase.
 
  
 0.939
ftsK
DNA translocase FtsK.
 
    0.876
BAN00706.1
Putative polyprenyl diphosphate synthase.
  
    0.738
crtE
Geranylgeranyl pyrophosphate synthase.
  
    0.738
BAN01955.1
Hypothetical protein.
       0.678
BAN01956.1
Hypothetical protein.
       0.678
pnp
Polyribonucleotide nucleotidyltransferase; Protein synonym:polynucleotide phosphorylase.
 
  
 0.645
BAN01957.1
Hypothetical protein.
       0.620
BAN04601.1
Hypothetical protein.
  
   
 0.578
BAN01951.1
Hypothetical protein.
  
    0.561
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
Server load: low (10%) [HD]