STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN01987.1Putative AraC family transcriptional regulator. (332 aa)    
Predicted Functional Partners:
BAN01988.1
Hypothetical protein.
 
     0.841
BAN01989.1
Hypothetical protein.
       0.752
BAN02873.1
Putative AraC family transcriptional regulator.
  
     0.701
BAN01990.1
Putative iron-sulfur protein.
     
 0.518
npdA
NAD-dependent deacetylase; Protein synonym:regulatory protein SIR2 homolog.
  
  
 0.472
BAN02754.1
Putative GntR family transcriptional regulator.
   
  
 0.449
BAN04356.1
Putative GntR family transcriptional regulator.
   
  
 0.449
BAN03188.1
Putative LytR family regulatory protein.
   
    0.407
BAN03810.1
Putative LytR family regulatory protein.
   
    0.407
rpoA
DNA-directed RNA polymerase alpha subunit; Protein synonym:transcriptase alpha subunit.
   
 
 0.406
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.