Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BAN02992.1 | aroB | YM304_26780 | YM304_20360 | Phospho-2-dehydro-3-deoxyheptonate aldolase; Protein synonym:3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 3-dehydroquinate synthase. | 0.800 |
| BAN02992.1 | aroC | YM304_26780 | YM304_20340 | Phospho-2-dehydro-3-deoxyheptonate aldolase; Protein synonym:3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.422 |
| aroA | aroB | YM304_25000 | YM304_20360 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | 3-dehydroquinate synthase. | 0.990 |
| aroA | aroC | YM304_25000 | YM304_20340 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
| aroA | aroE | YM304_25000 | YM304_20320 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | Shikimate dehydrogenase. | 0.991 |
| aroA | aroK | YM304_25000 | YM304_20350 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | Shikimate kinase. | 0.987 |
| aroA | aroQ | YM304_25000 | YM304_07100 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | 3-dehydroquinate dehydratase. | 0.421 |
| aroA | tyrA | YM304_25000 | YM304_24990 | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | Putative prephenate dehydrogenase. | 0.993 |
| aroB | BAN02992.1 | YM304_20360 | YM304_26780 | 3-dehydroquinate synthase. | Phospho-2-dehydro-3-deoxyheptonate aldolase; Protein synonym:3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.800 |
| aroB | aroA | YM304_20360 | YM304_25000 | 3-dehydroquinate synthase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | 0.990 |
| aroB | aroC | YM304_20360 | YM304_20340 | 3-dehydroquinate synthase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
| aroB | aroE | YM304_20360 | YM304_20320 | 3-dehydroquinate synthase. | Shikimate dehydrogenase. | 0.992 |
| aroB | aroK | YM304_20360 | YM304_20350 | 3-dehydroquinate synthase. | Shikimate kinase. | 0.999 |
| aroB | aroQ | YM304_20360 | YM304_07100 | 3-dehydroquinate synthase. | 3-dehydroquinate dehydratase. | 0.957 |
| aroB | efp | YM304_20360 | YM304_20380 | 3-dehydroquinate synthase. | Elongation factor P; Protein synonym:EF-P. | 0.785 |
| aroB | nusB | YM304_20360 | YM304_20390 | 3-dehydroquinate synthase. | Transcription antitermination protein NusB. | 0.665 |
| aroB | pepQ | YM304_20360 | YM304_20370 | 3-dehydroquinate synthase. | Putative Xaa-Pro dipeptidase; Protein synonym:proline dipeptidase. | 0.791 |
| aroB | tyrA | YM304_20360 | YM304_24990 | 3-dehydroquinate synthase. | Putative prephenate dehydrogenase. | 0.842 |
| aroC | BAN02992.1 | YM304_20340 | YM304_26780 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | Phospho-2-dehydro-3-deoxyheptonate aldolase; Protein synonym:3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.422 |
| aroC | aroA | YM304_20340 | YM304_25000 | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 3-phosphoshikimate 1-carboxyvinyltransferase; Protein synonym:5-enolpyruvylshikimate-3-phosphate synthase. | 0.998 |
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