STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN03246.1Hypothetical protein. (96 aa)    
Predicted Functional Partners:
secG
Protein synonym:preprotein translocase SecG subunit.
  
     0.758
BAN03170.1
Hypothetical protein.
  
     0.692
valS
valyl-tRNA synthetase; Protein synonym:valine--tRNA ligase.
  
     0.679
BAN02887.1
Putative MerR family transcriptional regulator.
  
     0.644
BAN01080.1
Putative WhiB family transcriptional regulator.
  
     0.635
BAN01094.1
Hypothetical protein.
  
     0.633
whiB
Putative WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.631
BAN03753.1
Hypothetical protein.
  
     0.624
BAN01302.1
Putative WhiB family transcriptional regulator.
  
     0.610
BAN02369.1
Putative methyltransferase.
  
     0.580
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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