STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAN04053.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
crtE
Geranylgeranyl pyrophosphate synthase.
       0.592
xseA
Protein synonym:exonuclease VII large subunit.
       0.580
xseB
Protein synonym:exonuclease VII small subunit.
       0.580
BAN04050.1
Hypothetical protein.
       0.443
crtI
Protein synonym:phytoene desaturase.
       0.435
crtB
Phytoene synthase.
       0.432
BAN04057.1
Hypothetical protein.
       0.432
BAN04058.1
Putative phytoene dehydrogenase; Protein synonym:phytoene desaturase.
       0.432
BAN04059.1
Putative glycosyltransferase.
       0.432
Your Current Organism:
Ilumatobacter coccineus
NCBI taxonomy Id: 1313172
Other names: Acidimicrobidae bacterium YM16-304, I. coccineus YM16-304, Ilumatobacter coccineum YM16-304, Ilumatobacter coccineus YM16-304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.