STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0231Glycoside hydrolase, GH16 family. (481 aa)    
Predicted Functional Partners:
CALK_0230
Transcriptional regulator, AraC family.
       0.773
CALK_0628
Beta-glucosidase.
    
 0.523
CALK_0232
Polysaccharide lyase family protein.
       0.482
CALK_0022
Glycoside hydrolase, GH5 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.439
CALK_1095
Glycoside hydrolase, GH5 family; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.439
CALK_2469
Hypothetical protein.
    
 0.439
CALK_1745
Lipopolysaccharide biosynthesis protein.
     
 0.417
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.