STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CALK_0321Short-chain dehydrogenase/reductase SDR. (240 aa)    
Predicted Functional Partners:
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.892
CALK_1824
IMP dehydrogenase/GMP reductase.
   
 0.836
CALK_2170
Bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.824
CALK_0640
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type.
    
 
 0.811
CALK_1166
Hypothetical protein.
  
 0.810
CALK_0459
GH2 family glycoside hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.780
CALK_0139
1-phosphofructokinase.
   
 
 0.777
CALK_2432
Hypothetical protein.
    
 0.775
CALK_0322
SpoU rRNA methylase.
       0.773
CALK_0470
malonyl-CoA O-methyltransferase.
  
 0.772
Your Current Organism:
Chitinivibrio alkaliphilus
NCBI taxonomy Id: 1313304
Other names: C. alkaliphilus ACht1, Chitinivibrio alkaliphilus ACht1, candidate division TG3 bacterium ACht1, haloalkaliphilic bacterium ACht1
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