STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC1DEP domain containing 1. (792 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
     
 0.812
RDH10
Retinol dehydrogenase 10.
   
 
 0.801
SOAT1
Sterol O-acyltransferase 1.
   
 
 0.793
PNPLA4
Patatin like phospholipase domain containing 4.
     
 0.789
MOGAT1
Monoacylglycerol O-acyltransferase 1.
   
 
 0.777
CCNB2
Cyclin B2.
   
    0.711
FDFT1
Farnesyl-diphosphate farnesyltransferase 1.
    
 0.693
RDH5
Retinol dehydrogenase 5.
   
 
 0.675
RDH16
Retinol dehydrogenase 16-like.
   
 
 0.675
ALDH3A2
Aldehyde dehydrogenase 3 family member A2.
    
 0.669
Your Current Organism:
Melopsittacus undulatus
NCBI taxonomy Id: 13146
Other names: M. undulatus, Melopsittacus unduratus, budgerigar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.