A0A1Y1YS26 protein (Basidiobolus meristosporus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y1YS26

Thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)

Predicted Functional Partners:

A0A1Y1YRX7

0.989

A0A1Y1WR69

0.986

A0A1Y1YS50

0.982

A0A1Y1XY05

0.981

A0A1Y1Y2Z1

0.981

A0A1Y1XG66

0.951

A0A1Y1YKP6

0.951

A0A1Y1YWE9

0.943

A0A1Y1XE60

0.935

A0A1Y1XGN3

0.935

Your Current Organism:

Basidiobolus meristosporus

NCBI taxonomy Id: 1314790
Other names: B. meristosporus CBS 931.73, Basidiobolus meristosporus CBS 931.73

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y1WR69	A0A1Y1XE60	Uncharacterized protein.	ClpP/crotonase.	0.858
A0A1Y1WR69	A0A1Y1XG66	Uncharacterized protein.	ClpP/crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.990
A0A1Y1WR69	A0A1Y1XGN3	Uncharacterized protein.	ClpP/crotonase.	0.805
A0A1Y1WR69	A0A1Y1XY05	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.709
A0A1Y1WR69	A0A1Y1Y2Z1	Uncharacterized protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.709
A0A1Y1WR69	A0A1Y1YKP6	Uncharacterized protein.	Enoyl-CoA hydratase mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.	0.990
A0A1Y1WR69	A0A1Y1YS26	Uncharacterized protein.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.986
A0A1Y1WR69	A0A1Y1YS50	Uncharacterized protein.	Acyl-CoA dehydrogenase NM domain-like protein.	0.927
A0A1Y1WR69	A0A1Y1YWE9	Uncharacterized protein.	Enoyl-CoA hydratase/isomerase.	0.861
A0A1Y1XE60	A0A1Y1WR69	ClpP/crotonase.	Uncharacterized protein.	0.858
A0A1Y1XE60	A0A1Y1XG66	ClpP/crotonase.	ClpP/crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.887
A0A1Y1XE60	A0A1Y1XY05	ClpP/crotonase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.750
A0A1Y1XE60	A0A1Y1Y2Z1	ClpP/crotonase.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.750
A0A1Y1XE60	A0A1Y1YKP6	ClpP/crotonase.	Enoyl-CoA hydratase mitochondrial; Belongs to the enoyl-CoA hydratase/isomerase family.	0.886
A0A1Y1XE60	A0A1Y1YRX7	ClpP/crotonase.	3-hydroxyacyl-CoA dehydrogenase.	0.858
A0A1Y1XE60	A0A1Y1YS26	ClpP/crotonase.	Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.935
A0A1Y1XE60	A0A1Y1YS50	ClpP/crotonase.	Acyl-CoA dehydrogenase NM domain-like protein.	0.858
A0A1Y1XE60	A0A1Y1YWE9	ClpP/crotonase.	Enoyl-CoA hydratase/isomerase.	0.861
A0A1Y1XG66	A0A1Y1WR69	ClpP/crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.	Uncharacterized protein.	0.990
A0A1Y1XG66	A0A1Y1XE60	ClpP/crotonase; Belongs to the enoyl-CoA hydratase/isomerase family.	ClpP/crotonase.	0.887