STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATO7_06465Ammonium transporter; COG0004 Ammonia permease. (421 aa)    
Predicted Functional Partners:
ATO7_06460
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 0.999
ATO7_12868
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 0.996
gltB
COG0067 Glutamate synthase domain 1.
 
  
 0.927
ATO7_08002
Sensor protein GacS; COG0642 Signal transduction histidine kinase.
 
  
 0.766
ATO7_06450
Putative Diguanylate cyclase/phosphodiesterase; COG2199 FOG: GGDEF domain.
      0.720
ATO7_04900
PAS/PAC sensor signal transduction histidine kinase; COG2202 FOG: PAS/PAC domain.
    
 0.712
ATO7_00890
PAS/PAC sensor(s)-containing diguanylate cyclase/phosphodiesterase; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
    
 0.641
ATO7_14883
GacS/BarA family sensor protein; COG0642 Signal transduction histidine kinase.
 
  
 0.636
ATO7_09872
Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
   
 0.635
ATO7_03420
EAL and cyclic nucleotide-binding domain-containing protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
    
 0.633
Your Current Organism:
Oceanococcus atlanticus
NCBI taxonomy Id: 1317117
Other names: CGMCC 1.12317, LMG 27155, LMG:27155, MCCC 1A09384, Maricoccus atlantica, O. atlanticus, Oceanococcus atlanticus Li et al. 2014, Thioalkalivibrio sp. 22II-S10r2, strain 22II-S10r2
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