R4FKI2_RHOPR protein (Rhodnius prolixus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

R4FKI2_RHOPR

Putative nucleolar rna-binding protein nifk. (205 aa)

Predicted Functional Partners:

T1HBR5_RHOPR

0.999

T1I0P5_RHOPR

0.999

T1I7W4_RHOPR

0.999

R4FLY1_RHOPR

0.998

T1HB13_RHOPR

0.998

T1HB18_RHOPR

0.998

T1HLE9_RHOPR

0.998

T1HQF3_RHOPR

0.998

T1HZK0_RHOPR

0.998

R4G3Z0_RHOPR

0.997

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FKI2_RHOPR	R4FLY1_RHOPR	R4FKI2	R4FLY1	Putative nucleolar rna-binding protein nifk.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.998
R4FKI2_RHOPR	R4G3Z0_RHOPR	R4FKI2	R4G3Z0	Putative nucleolar rna-binding protein nifk.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.997
R4FKI2_RHOPR	T1HB13_RHOPR	R4FKI2	T1HB13	Putative nucleolar rna-binding protein nifk.	Helicase C-terminal domain-containing protein; Belongs to the DEAD box helicase family.	0.998
R4FKI2_RHOPR	T1HB18_RHOPR	R4FKI2	T1HB18	Putative nucleolar rna-binding protein nifk.	Uncharacterized protein.	0.998
R4FKI2_RHOPR	T1HBR5_RHOPR	R4FKI2	T1HBR5	Putative nucleolar rna-binding protein nifk.	CP-type G domain-containing protein.	0.999
R4FKI2_RHOPR	T1HLE9_RHOPR	R4FKI2	T1HLE9	Putative nucleolar rna-binding protein nifk.	Uncharacterized protein.	0.998
R4FKI2_RHOPR	T1HQF3_RHOPR	R4FKI2	T1HQF3	Putative nucleolar rna-binding protein nifk.	Brix domain-containing protein.	0.998
R4FKI2_RHOPR	T1HZK0_RHOPR	R4FKI2	T1HZK0	Putative nucleolar rna-binding protein nifk.	Brix domain-containing protein.	0.998
R4FKI2_RHOPR	T1I0P5_RHOPR	R4FKI2	T1I0P5	Putative nucleolar rna-binding protein nifk.	Uncharacterized protein.	0.999
R4FKI2_RHOPR	T1I7W4_RHOPR	R4FKI2	T1I7W4	Putative nucleolar rna-binding protein nifk.	Brix domain-containing protein.	0.999
R4FLY1_RHOPR	R4FKI2_RHOPR	R4FLY1	R4FKI2	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Putative nucleolar rna-binding protein nifk.	0.998
R4FLY1_RHOPR	R4G3Z0_RHOPR	R4FLY1	R4G3Z0	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.963
R4FLY1_RHOPR	T1HB13_RHOPR	R4FLY1	T1HB13	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Helicase C-terminal domain-containing protein; Belongs to the DEAD box helicase family.	0.995
R4FLY1_RHOPR	T1HB18_RHOPR	R4FLY1	T1HB18	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Uncharacterized protein.	0.994
R4FLY1_RHOPR	T1HBR5_RHOPR	R4FLY1	T1HBR5	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	CP-type G domain-containing protein.	0.993
R4FLY1_RHOPR	T1HLE9_RHOPR	R4FLY1	T1HLE9	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Uncharacterized protein.	0.997
R4FLY1_RHOPR	T1HQF3_RHOPR	R4FLY1	T1HQF3	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Brix domain-containing protein.	0.997
R4FLY1_RHOPR	T1HZK0_RHOPR	R4FLY1	T1HZK0	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Brix domain-containing protein.	0.995
R4FLY1_RHOPR	T1I0P5_RHOPR	R4FLY1	T1I0P5	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Uncharacterized protein.	0.995
R4FLY1_RHOPR	T1I7W4_RHOPR	R4FLY1	T1I7W4	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Brix domain-containing protein.	0.998