T1I408_RHOPR protein (Rhodnius prolixus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

T1I408_RHOPR

Uncharacterized protein. (584 aa)

Predicted Functional Partners:

T1HWI8_RHOPR

0.994

T1HWS2_RHOPR

0.994

T1I785_RHOPR

0.984

T1I6W8_RHOPR

0.982

T1I739_RHOPR

0.982

R4FML1_RHOPR

0.973

R4FPV5_RHOPR

0.971

R4FN54_RHOPR

0.969

T1HY72_RHOPR

0.968

R4G4E2_RHOPR

0.961

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FML1_RHOPR	R4FN54_RHOPR	R4FML1	R4FN54	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
R4FML1_RHOPR	R4FPV5_RHOPR	R4FML1	R4FPV5	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Putative dna-directed rna polymerase.	0.999
R4FML1_RHOPR	R4G4E2_RHOPR	R4FML1	R4G4E2	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
R4FML1_RHOPR	T1HWI8_RHOPR	R4FML1	T1HWI8	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	HDAg domain-containing protein.	0.966
R4FML1_RHOPR	T1HWS2_RHOPR	R4FML1	T1HWS2	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	RRM domain-containing protein.	0.944
R4FML1_RHOPR	T1HY72_RHOPR	R4FML1	T1HY72	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Uncharacterized protein.	0.840
R4FML1_RHOPR	T1I408_RHOPR	R4FML1	T1I408	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Uncharacterized protein.	0.973
R4FML1_RHOPR	T1I6W8_RHOPR	R4FML1	T1I6W8	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Uncharacterized protein.	0.928
R4FML1_RHOPR	T1I739_RHOPR	R4FML1	T1I739	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Uncharacterized protein.	0.928
R4FML1_RHOPR	T1I785_RHOPR	R4FML1	T1I785	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	Uncharacterized protein.	0.997
R4FN54_RHOPR	R4FML1_RHOPR	R4FN54	R4FML1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Putative dna-directed rna polymerase ii 33 kDa polypeptide.	0.998
R4FN54_RHOPR	R4FPV5_RHOPR	R4FN54	R4FPV5	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Putative dna-directed rna polymerase.	0.999
R4FN54_RHOPR	R4G4E2_RHOPR	R4FN54	R4G4E2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
R4FN54_RHOPR	T1HWI8_RHOPR	R4FN54	T1HWI8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	HDAg domain-containing protein.	0.964
R4FN54_RHOPR	T1HWS2_RHOPR	R4FN54	T1HWS2	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RRM domain-containing protein.	0.906
R4FN54_RHOPR	T1HY72_RHOPR	R4FN54	T1HY72	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.813
R4FN54_RHOPR	T1I408_RHOPR	R4FN54	T1I408	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.969
R4FN54_RHOPR	T1I6W8_RHOPR	R4FN54	T1I6W8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.895
R4FN54_RHOPR	T1I739_RHOPR	R4FN54	T1I739	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.895
R4FN54_RHOPR	T1I785_RHOPR	R4FN54	T1I785	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.994