STRINGSTRING
ERM94200 protein (Amborella trichopoda) - STRING interaction network
"ERM94200" - Uncharacterized protein in Amborella trichopoda
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERM94200Uncharacterized protein (272 aa)    
Predicted Functional Partners:
ERN10957
Uncharacterized protein (235 aa)
           
  0.734
ERN18343
Uncharacterized protein (673 aa)
           
  0.715
ERN11567
Uncharacterized protein (560 aa)
           
  0.715
ERN02510
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily (492 aa)
           
  0.691
ERN00588
Uncharacterized protein (810 aa)
           
  0.640
ERN14929
Uncharacterized protein (1352 aa)
           
  0.626
ERN19782
Uncharacterized protein (257 aa)
       
 
  0.545
ERN15947
Histone deacetylase (650 aa)
           
  0.545
ERN00586
Uncharacterized protein (187 aa)
           
  0.545
ERM96340
GATA transcription factor; Transcriptional activator that specifically binds 5’- GATA-3’ or 5’-GAT-3’ motifs within gene promoters (261 aa)
     
   
  0.544
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda, Amborella trichopoda Baill.
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