U5CW43_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U5CW43_AMBTC

Fmp27_GFWDK domain-containing protein. (2692 aa)

Predicted Functional Partners:

U5CW86_AMBTC

0.769

W1NV74_AMBTC

0.769

U5DD99_AMBTC

0.744

W1PCK9_AMBTC

0.675

W1P3F8_AMBTC

0.629

U5CRN3_AMBTC

0.619

W1NT80_AMBTC

0.615

rps12

0.593

W1NW85_AMBTC

0.579

W1NQU1_AMBTC

0.566

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5CRN3_AMBTC	U5CW43_AMBTC	U5CRN3	U5CW43	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Fmp27_GFWDK domain-containing protein.	0.619
U5CRN3_AMBTC	U5CW86_AMBTC	U5CRN3	U5CW86	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.851
U5CRN3_AMBTC	U5DD99_AMBTC	U5CRN3	U5DD99	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.999
U5CRN3_AMBTC	W1NT80_AMBTC	U5CRN3	W1NT80	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.996
U5CRN3_AMBTC	W1NV74_AMBTC	U5CRN3	W1NV74	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Tr-type G domain-containing protein.	0.851
U5CRN3_AMBTC	W1PCK9_AMBTC	U5CRN3	W1PCK9	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.998
U5CRN3_AMBTC	rps12	U5CRN3	Q70XU7	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.992
U5CW43_AMBTC	U5CRN3_AMBTC	U5CW43	U5CRN3	Fmp27_GFWDK domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.619
U5CW43_AMBTC	U5CW86_AMBTC	U5CW43	U5CW86	Fmp27_GFWDK domain-containing protein.	Tr-type G domain-containing protein.	0.769
U5CW43_AMBTC	U5DD99_AMBTC	U5CW43	U5DD99	Fmp27_GFWDK domain-containing protein.	MRP-S28 domain-containing protein.	0.744
U5CW43_AMBTC	W1NQU1_AMBTC	U5CW43	W1NQU1	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein; Belongs to the DOCK family.	0.566
U5CW43_AMBTC	W1NT80_AMBTC	U5CW43	W1NT80	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.615
U5CW43_AMBTC	W1NV74_AMBTC	U5CW43	W1NV74	Fmp27_GFWDK domain-containing protein.	Tr-type G domain-containing protein.	0.769
U5CW43_AMBTC	W1NW85_AMBTC	U5CW43	W1NW85	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.579
U5CW43_AMBTC	W1P3F8_AMBTC	U5CW43	W1P3F8	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.629
U5CW43_AMBTC	W1PCK9_AMBTC	U5CW43	W1PCK9	Fmp27_GFWDK domain-containing protein.	Uncharacterized protein.	0.675
U5CW43_AMBTC	rps12	U5CW43	Q70XU7	Fmp27_GFWDK domain-containing protein.	30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).	0.593
U5CW86_AMBTC	U5CRN3_AMBTC	U5CW86	U5CRN3	Tr-type G domain-containing protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.851
U5CW86_AMBTC	U5CW43_AMBTC	U5CW86	U5CW43	Tr-type G domain-containing protein.	Fmp27_GFWDK domain-containing protein.	0.769
U5CW86_AMBTC	U5DD99_AMBTC	U5CW86	U5DD99	Tr-type G domain-containing protein.	MRP-S28 domain-containing protein.	0.810