STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5CYV7_AMBTCUncharacterized protein. (567 aa)    
Predicted Functional Partners:
W1NK52_AMBTC
CPSF_A domain-containing protein.
    
 
 0.952
W1NUM2_AMBTC
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.913
W1PVI7_AMBTC
RING-type domain-containing protein.
    
 
 0.847
W1NFJ0_AMBTC
Tr-type G domain-containing protein.
    
 
 0.845
W1NRY2_AMBTC
Uncharacterized protein.
    
   0.716
U5DAX2_AMBTC
PCI domain-containing protein.
    
 
 0.656
W1NL95_AMBTC
Uncharacterized protein.
     
 0.629
W1PD00_AMBTC
Uncharacterized protein.
     
 0.629
W1PM22_AMBTC
CSN8_PSD8_EIF3K domain-containing protein.
    
 
 0.607
U5DA02_AMBTC
MPN domain-containing protein.
    
 
 0.597
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.