U5D132_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

U5D132_AMBTC

Transferrin-like domain-containing protein. (501 aa)

Predicted Functional Partners:

U5D9W0_AMBTC

0.507

W1NVA7_AMBTC

0.507

W1PGF9_AMBTC

0.507

W1PIH2_AMBTC

0.503

W1PMH4_AMBTC

0.490

W1NN93_AMBTC

0.477

W1PPY3_AMBTC

0.465

W1NUR4_AMBTC

0.459

U5DAZ9_AMBTC

0.449

W1NUL4_AMBTC

0.449

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
U5D132_AMBTC	U5D9W0_AMBTC	U5D132	U5D9W0	Transferrin-like domain-containing protein.	CBF domain-containing protein.	0.507
U5D132_AMBTC	U5DAZ9_AMBTC	U5D132	U5DAZ9	Transferrin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.449
U5D132_AMBTC	W1NN93_AMBTC	U5D132	W1NN93	Transferrin-like domain-containing protein.	Uncharacterized protein.	0.477
U5D132_AMBTC	W1NUL4_AMBTC	U5D132	W1NUL4	Transferrin-like domain-containing protein.	Uncharacterized protein.	0.449
U5D132_AMBTC	W1NUR4_AMBTC	U5D132	W1NUR4	Transferrin-like domain-containing protein.	Nop domain-containing protein.	0.459
U5D132_AMBTC	W1NVA7_AMBTC	U5D132	W1NVA7	Transferrin-like domain-containing protein.	Uncharacterized protein.	0.507
U5D132_AMBTC	W1PGF9_AMBTC	U5D132	W1PGF9	Transferrin-like domain-containing protein.	Uncharacterized protein.	0.507
U5D132_AMBTC	W1PIH2_AMBTC	U5D132	W1PIH2	Transferrin-like domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.503
U5D132_AMBTC	W1PMH4_AMBTC	U5D132	W1PMH4	Transferrin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.490
U5D132_AMBTC	W1PPY3_AMBTC	U5D132	W1PPY3	Transferrin-like domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.465
U5D9W0_AMBTC	U5D132_AMBTC	U5D9W0	U5D132	CBF domain-containing protein.	Transferrin-like domain-containing protein.	0.507
U5D9W0_AMBTC	U5DAZ9_AMBTC	U5D9W0	U5DAZ9	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
U5D9W0_AMBTC	W1NN93_AMBTC	U5D9W0	W1NN93	CBF domain-containing protein.	Uncharacterized protein.	0.996
U5D9W0_AMBTC	W1NUL4_AMBTC	U5D9W0	W1NUL4	CBF domain-containing protein.	Uncharacterized protein.	0.997
U5D9W0_AMBTC	W1NUR4_AMBTC	U5D9W0	W1NUR4	CBF domain-containing protein.	Nop domain-containing protein.	0.979
U5D9W0_AMBTC	W1NVA7_AMBTC	U5D9W0	W1NVA7	CBF domain-containing protein.	Uncharacterized protein.	0.996
U5D9W0_AMBTC	W1PGF9_AMBTC	U5D9W0	W1PGF9	CBF domain-containing protein.	Uncharacterized protein.	0.989
U5D9W0_AMBTC	W1PIH2_AMBTC	U5D9W0	W1PIH2	CBF domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.996
U5D9W0_AMBTC	W1PMH4_AMBTC	U5D9W0	W1PMH4	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
U5D9W0_AMBTC	W1PPY3_AMBTC	U5D9W0	W1PPY3	CBF domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.883