STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5D7Z8_AMBTCUncharacterized protein. (315 aa)    
Predicted Functional Partners:
U5D721_AMBTC
Alkyl transferase; Belongs to the UPP synthase family.
   
 0.988
W1PQ02_AMBTC
Alkyl transferase; Belongs to the UPP synthase family.
   
 0.988
W1Q0C4_AMBTC
Alkyl transferase; Belongs to the UPP synthase family.
   
 0.988
U5CYN4_AMBTC
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.940
U5D5S7_AMBTC
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.940
W1NM36_AMBTC
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.940
W1P6S3_AMBTC
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
  
 
 0.940
U5DHX5_AMBTC
Uncharacterized protein.
     
 0.927
W1PF95_AMBTC
Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.
     
 0.926
W1NLL2_AMBTC
Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.
   
 0.889
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.