STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DAG2_AMBTCAminotran_1_2 domain-containing protein. (541 aa)    
Predicted Functional Partners:
U5DG81_AMBTC
Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; In the N-terminal section; belongs to the aldolase class II family. MtnB subfamily.
  
  
 0.617
W1Q003_AMBTC
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
  
 
 0.607
W1NKE3_AMBTC
Uncharacterized protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.581
W1PN30_AMBTC
Uncharacterized protein.
  
 
 0.581
W1NL80_AMBTC
Ammonium_transp domain-containing protein.
     
 0.578
W1PF25_AMBTC
Aspartokinase; Belongs to the aspartokinase family.
  
 
 0.558
U5CSR3_AMBTC
Glutamine amidotransferase type-2 domain-containing protein.
     
 0.548
U5CVN8_AMBTC
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
  
 
 0.540
W1PCZ5_AMBTC
Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine.
  
 
 0.540
W1P1F3_AMBTC
Ammonium transporter.
     
 0.536
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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