STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U5DCT7_AMBTCABC1 domain-containing protein. (611 aa)    
Predicted Functional Partners:
W1PKJ1_AMBTC
Mg-por_mtran_C domain-containing protein.
   
 0.591
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
   
 0.591
W1P6K1_AMBTC
ABC1 domain-containing protein.
  
 
 
0.571
U5CRM6_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
    0.535
U5CUR3_AMBTC
Uncharacterized protein.
   
    0.509
W1P6J2_AMBTC
Uncharacterized protein.
   
    0.509
W1P894_AMBTC
Uncharacterized protein.
   
    0.509
U5D8A3_AMBTC
Uncharacterized protein.
   
 
 0.445
ndhJ
NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
     
 0.427
W1PAH9_AMBTC
COX1 domain-containing protein.
     
 0.425
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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