STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NFD4_AMBTCRING-type domain-containing protein. (340 aa)    
Predicted Functional Partners:
W1NJN9_AMBTC
GST N-terminal domain-containing protein.
   
 
 0.657
W1NT80_AMBTC
Uncharacterized protein.
  
  
 0.551
atpF
ATP synthase subunit b, chloroplastic; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
   
  
 0.518
W1PKM3_AMBTC
Ribosomal_S10 domain-containing protein.
   
   0.513
W1PSN3_AMBTC
Ribosomal_S10 domain-containing protein.
   
   0.513
W1PJ72_AMBTC
Delta-1-pyrroline-5-carboxylate synthase; P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants; In the N-terminal section; belongs to the glutamate 5- kinase family.
     
 0.504
U5DE55_AMBTC
Eukaryotic translation initiation factor 5A.
   
  
 0.503
U5DIJ0_AMBTC
Uncharacterized protein.
   
  
 0.503
W1P8D1_AMBTC
Uncharacterized protein.
   
  
 0.503
W1P9E6_AMBTC
Eukaryotic translation initiation factor 5A.
   
  
 0.503
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.