STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NGP2_AMBTCPseudoU_synth_1 domain-containing protein. (446 aa)    
Predicted Functional Partners:
W1NV91_AMBTC
TRUD domain-containing protein.
   
 
 0.790
W1P200_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 
 0.741
W1PNT3_AMBTC
FtsJ domain-containing protein.
   
 
 0.692
W1PKX8_AMBTC
Brix domain-containing protein.
   
    0.681
U5CZT5_AMBTC
RPOLD domain-containing protein.
  
  
 0.680
U5DCR5_AMBTC
RPOLD domain-containing protein.
  
  
 0.680
U5DCV6_AMBTC
SAM-dependent MTase TRM10-type domain-containing protein.
   
 
 0.678
W1NTI9_AMBTC
Uncharacterized protein.
   
    0.678
U5CYR4_AMBTC
Uncharacterized protein.
   
  
 0.676
W1PIJ8_AMBTC
Cytoplasmic tRNA 2-thiolation protein 2; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6/CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
   
 
 0.663
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.