STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NI22_AMBTCUncharacterized protein. (459 aa)    
Predicted Functional Partners:
U5D9S6_AMBTC
Uncharacterized protein.
  
     0.505
W1NPG1_AMBTC
Uncharacterized protein.
  
     0.488
W1PHJ1_AMBTC
Uncharacterized protein.
  
     0.476
W1PMF9_AMBTC
Ubiquitin-like domain-containing protein.
  
     0.471
W1PDJ0_AMBTC
Uncharacterized protein.
  
     0.435
W1NSM9_AMBTC
TIR domain-containing protein.
  
     0.434
U5CQ08_AMBTC
NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.
  
     0.401
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.