STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NJN9_AMBTCGST N-terminal domain-containing protein. (86 aa)    
Predicted Functional Partners:
U5CN57_AMBTC
EF1_GNE domain-containing protein; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.999
U5CNV8_AMBTC
Tr-type G domain-containing protein.
   
 
 0.999
U5CVW0_AMBTC
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.999
U5CXB9_AMBTC
EF1_GNE domain-containing protein.
   
 0.999
U5CXR8_AMBTC
PUA domain-containing protein.
   
 
 0.999
U5D0Y9_AMBTC
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.999
U5D3B2_AMBTC
Ribosomal_L18e/L15P domain-containing protein.
   
  
 0.999
U5D410_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.
  
  
 0.999
U5D6Q0_AMBTC
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.999
U5DA24_AMBTC
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
  
 0.999
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.