STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NKM9_AMBTCAAA domain-containing protein. (713 aa)    
Predicted Functional Partners:
W1P2C5_AMBTC
Prohibitin.
   
 0.665
W1NSF0_AMBTC
ATP-dependent Clp protease proteolytic subunit.
   
 
 0.550
U5D1Q4_AMBTC
Uncharacterized protein.
      
 0.533
W1P3C8_AMBTC
Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.
    
 
 0.530
W1NPH5_AMBTC
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
      
 0.497
W1PMV0_AMBTC
AAA domain-containing protein.
  
     0.482
U5DBS8_AMBTC
Prohibitin.
   
 0.475
U5DHK1_AMBTC
Prohibitin.
   
 0.475
W1PEY8_AMBTC
Prohibitin.
   
 0.475
W1PHV1_AMBTC
PDZ domain-containing protein.
  
  
 0.469
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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