STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NQP7_AMBTCMethyltranfer_dom domain-containing protein. (577 aa)    
Predicted Functional Partners:
U5D2M4_AMBTC
UBA domain-containing protein.
    
 0.623
W1NH84_AMBTC
Methyltransf_11 domain-containing protein.
      
 0.463
W1NU00_AMBTC
MTS domain-containing protein.
      
 0.463
W1NWR3_AMBTC
Protein-lysine N-methyltransferase AMTR_s00105p00145330; S-adenosyl-L-methionine-dependent protein-lysine N- methyltransferase that methylates elongation factor 1-alpha. Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.
      
 0.463
U5D1C4_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
     
 0.404
W1NWK9_AMBTC
WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.
     
 0.404
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.