STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NRA1_AMBTCUncharacterized protein; Belongs to the RNA polymerase beta chain family. (511 aa)    
Predicted Functional Partners:
U5CL83_AMBTC
Uncharacterized protein.
 
     0.950
W1PFV9_AMBTC
Uncharacterized protein.
 
     0.950
rpoC1
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the RNA polymerase beta' chain family. RpoC1 subfamily.
 
     0.943
U5CZT5_AMBTC
RPOLD domain-containing protein.
  
 0.899
U5DG00_AMBTC
Uncharacterized protein.
  
 0.869
U5DCR5_AMBTC
RPOLD domain-containing protein.
  
 0.815
U5CY16_AMBTC
Uncharacterized protein.
   
 0.804
U5D4P8_AMBTC
Uncharacterized protein.
   
 0.802
W1NUM1_AMBTC
RPOL9 domain-containing protein.
   
 0.802
U5D9C3_AMBTC
RNA_pol_L_2 domain-containing protein.
    
 0.800
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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