STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NST4_AMBTCAminotran_1_2 domain-containing protein. (527 aa)    
Predicted Functional Partners:
W1PBJ5_AMBTC
PINc domain-containing protein.
    
 0.957
U5DC72_AMBTC
Uncharacterized protein.
  
  
 0.870
W1PDW6_AMBTC
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.779
W1PXX2_AMBTC
Uncharacterized protein.
     
 0.757
U5D193_AMBTC
PKS_ER domain-containing protein.
  
 
 0.715
U5D9N6_AMBTC
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
  
 
 0.715
U5DAY7_AMBTC
Uncharacterized protein.
  
 
 0.715
W1PM72_AMBTC
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
  
 
 0.715
U5DD04_AMBTC
Uncharacterized protein.
    
 
 0.697
W1PJR0_AMBTC
Uncharacterized protein.
    
 
 0.697
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.