STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1NZ94_AMBTCUncharacterized protein. (357 aa)    
Predicted Functional Partners:
U5D227_AMBTC
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.663
U5D3J5_AMBTC
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.663
W1PUB9_AMBTC
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
    
 0.645
U5D5D0_AMBTC
Sec3-PIP2_bind domain-containing protein.
    
 0.626
W1PZ93_AMBTC
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.623
U5D6N8_AMBTC
Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.622
U5CZ87_AMBTC
Uncharacterized protein.
    
 0.609
W1PEA2_AMBTC
Uncharacterized protein.
    
 0.571
W1NEI6_AMBTC
Uncharacterized protein.
    
 0.545
W1P9A3_AMBTC
Uncharacterized protein.
    
 0.518
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.