STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P0D4_AMBTCUncharacterized protein. (191 aa)    
Predicted Functional Partners:
W1P8R0_AMBTC
tRNA-synt_1g domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.988
W1P8Y8_AMBTC
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.988
W1NTV8_AMBTC
AA_TRNA_LIGASE_II domain-containing protein.
 
   
  0.904
W1NLX0_AMBTC
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.879
W1PFT0_AMBTC
AA_TRNA_LIGASE_II domain-containing protein.
  
 0.879
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.820
W1PDP3_AMBTC
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.765
U5CYW5_AMBTC
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.737
W1P8E3_AMBTC
Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.724
W1P6U2_AMBTC
3'-5' exonuclease domain-containing protein.
   
 0.690
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.