STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P332_AMBTCProtoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (570 aa)    
Predicted Functional Partners:
W1NKQ0_AMBTC
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.992
U5D238_AMBTC
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
 
 0.989
W1PCN8_AMBTC
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.987
W1P3Y2_AMBTC
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.984
W1PGT2_AMBTC
Uroporphyrinogen_deCOase domain-containing protein.
 
 
 0.983
U5CPA6_AMBTC
Uncharacterized protein.
  
 
 0.981
W1PWU1_AMBTC
DUF3479 domain-containing protein.
     
 0.977
W1PAY0_AMBTC
Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family.
   
 
 0.964
W1PAA6_AMBTC
Amino_oxidase domain-containing protein.
  
  
0.917
W1PPU0_AMBTC
Uroporphyrinogen_deCOase domain-containing protein.
  
 
 0.796
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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