STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P3N1_AMBTCUsp domain-containing protein. (163 aa)    
Predicted Functional Partners:
W1PVW6_AMBTC
Uncharacterized protein.
    
 0.725
W1P1S7_AMBTC
Uncharacterized protein.
    
 0.674
W1NLN1_AMBTC
Uncharacterized protein.
   
 0.638
W1NRT4_AMBTC
Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.585
W1NS88_AMBTC
Na_H_Exchanger domain-containing protein.
      
 0.532
W1P2C7_AMBTC
Uncharacterized protein.
    
 0.518
W1P442_AMBTC
Uncharacterized protein.
    
 0.518
W1PI76_AMBTC
Uncharacterized protein.
    
 0.518
W1NK52_AMBTC
CPSF_A domain-containing protein.
    
 0.514
W1NSD4_AMBTC
Uncharacterized protein.
    
 0.512
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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