STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1P9V6_AMBTCPhospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1226 aa)    
Predicted Functional Partners:
W1NEE2_AMBTC
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
   
 0.737
U5D6N3_AMBTC
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
   
 0.699
W1NVC7_AMBTC
ALA-interacting subunit; Belongs to the CDC50/LEM3 family.
   
 0.660
U5CWC1_AMBTC
Tr-type G domain-containing protein.
      
 0.506
W1PDL6_AMBTC
Tr-type G domain-containing protein.
      
 0.506
U5D7P6_AMBTC
Abhydrolase_3 domain-containing protein.
      
 0.461
U5DBG0_AMBTC
Tryptophan synthase.
      
 0.461
W1NQU5_AMBTC
NAC domain-containing protein.
      
 0.451
W1PCN5_AMBTC
RING-type domain-containing protein.
      
 0.449
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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