STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PG06_AMBTCUncharacterized protein. (1186 aa)    
Predicted Functional Partners:
W1P2E3_AMBTC
Beta-Casp domain-containing protein.
  
 
 0.988
W1P7X1_AMBTC
Uncharacterized protein.
   
 0.987
W1NK91_AMBTC
Uncharacterized protein.
    
 0.977
W1PUM7_AMBTC
Uncharacterized protein.
   
 0.948
W1PVT9_AMBTC
Uncharacterized protein.
   
 0.948
U5DG00_AMBTC
Uncharacterized protein.
    
  0.895
U5D4P8_AMBTC
Uncharacterized protein.
    
  0.874
W1NUM1_AMBTC
RPOL9 domain-containing protein.
    
  0.874
U5CY16_AMBTC
Uncharacterized protein.
    
  0.871
U5CZT5_AMBTC
RPOLD domain-containing protein.
    
  0.871
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.