STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PGE5_AMBTCFe2OG dioxygenase domain-containing protein. (228 aa)    
Predicted Functional Partners:
W1PD27_AMBTC
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.929
U5D7V7_AMBTC
Proline iminopeptidase.
     
  0.900
W1PAQ3_AMBTC
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
     
  0.900
W1PFE7_AMBTC
Uncharacterized protein.
      
 0.463
W1NFX9_AMBTC
Uncharacterized protein.
      
 0.461
W1P4D6_AMBTC
GRAS domain-containing protein; Belongs to the GRAS family.
      
 0.461
U5DCQ7_AMBTC
Uncharacterized protein.
      
 0.420
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.