STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PGM7_AMBTCUncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (192 aa)    
Predicted Functional Partners:
W1PMH5_AMBTC
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.964
W1P4U6_AMBTC
HECT domain-containing protein.
   
 0.926
W1NXR4_AMBTC
HECT domain-containing protein.
   
 0.923
W1NRN9_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.907
W1PEZ7_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.907
W1NI89_AMBTC
Ubiquitin-like domain-containing protein.
   
 0.861
W1PSS1_AMBTC
Ubiquitin-like domain-containing protein.
   
 0.861
W1PXN9_AMBTC
Ubiquitin-like domain-containing protein.
   
 0.861
W1NUM7_AMBTC
Ubiquitin-like domain-containing protein.
    
 0.832
W1Q0S9_AMBTC
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.816
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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