W1PI52_AMBTC protein (Amborella trichopoda) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W1PI52_AMBTC

PMR5N domain-containing protein. (300 aa)

Predicted Functional Partners:

W1PIY1_AMBTC

0.828

W1NFV9_AMBTC

0.577

W1P190_AMBTC

0.497

W1NG56_AMBTC

0.474

W1NL27_AMBTC

0.474

W1NV92_AMBTC

0.474

W1P3H8_AMBTC

0.474

W1P3R9_AMBTC

0.474

W1P7D4_AMBTC

0.474

W1P935_AMBTC

0.474

Your Current Organism:

Amborella trichopoda

NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W1NFV9_AMBTC	W1NG56_AMBTC	W1NFV9	W1NG56	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.544
W1NFV9_AMBTC	W1NL27_AMBTC	W1NFV9	W1NL27	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	F-box domain-containing protein.	0.544
W1NFV9_AMBTC	W1NV92_AMBTC	W1NFV9	W1NV92	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.544
W1NFV9_AMBTC	W1P190_AMBTC	W1NFV9	W1P190	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.632
W1NFV9_AMBTC	W1P3H8_AMBTC	W1NFV9	W1P3H8	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.544
W1NFV9_AMBTC	W1P3R9_AMBTC	W1NFV9	W1P3R9	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.544
W1NFV9_AMBTC	W1P7D4_AMBTC	W1NFV9	W1P7D4	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.544
W1NFV9_AMBTC	W1P935_AMBTC	W1NFV9	W1P935	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Dynein light chain.	0.544
W1NFV9_AMBTC	W1PI52_AMBTC	W1NFV9	W1PI52	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	PMR5N domain-containing protein.	0.577
W1NFV9_AMBTC	W1PIY1_AMBTC	W1NFV9	W1PIY1	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	Uncharacterized protein.	0.666
W1NG56_AMBTC	W1NFV9_AMBTC	W1NG56	W1NFV9	Dynein light chain.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.544
W1NG56_AMBTC	W1NV92_AMBTC	W1NG56	W1NV92	Dynein light chain.	Dynein light chain.	0.565
W1NG56_AMBTC	W1P190_AMBTC	W1NG56	W1P190	Dynein light chain.	Uncharacterized protein.	0.485
W1NG56_AMBTC	W1P3H8_AMBTC	W1NG56	W1P3H8	Dynein light chain.	Dynein light chain.	0.768
W1NG56_AMBTC	W1P3R9_AMBTC	W1NG56	W1P3R9	Dynein light chain.	Uncharacterized protein.	0.559
W1NG56_AMBTC	W1P7D4_AMBTC	W1NG56	W1P7D4	Dynein light chain.	Dynein light chain.	0.540
W1NG56_AMBTC	W1PI52_AMBTC	W1NG56	W1PI52	Dynein light chain.	PMR5N domain-containing protein.	0.474
W1NG56_AMBTC	W1PIY1_AMBTC	W1NG56	W1PIY1	Dynein light chain.	Uncharacterized protein.	0.631
W1NL27_AMBTC	W1NFV9_AMBTC	W1NL27	W1NFV9	F-box domain-containing protein.	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.544
W1NL27_AMBTC	W1P190_AMBTC	W1NL27	W1P190	F-box domain-containing protein.	Uncharacterized protein.	0.485