STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PIX3_AMBTCUncharacterized protein. (274 aa)    
Predicted Functional Partners:
U5D263_AMBTC
Uncharacterized protein.
      
 0.539
W1PA88_AMBTC
Aa_trans domain-containing protein.
     
 0.522
U5DCN4_AMBTC
RING-type domain-containing protein.
      
 0.474
U5CXB0_AMBTC
Uncharacterized protein.
      
 0.461
W1PWK5_AMBTC
AN1-type domain-containing protein.
      
 0.449
W1NID7_AMBTC
RING-type domain-containing protein.
     
 0.448
W1PP01_AMBTC
RING-type domain-containing protein.
     
 0.448
W1NI75_AMBTC
Lipase_3 domain-containing protein.
      
 0.439
W1P794_AMBTC
PHB domain-containing protein.
      
 0.403
W1P7Z8_AMBTC
PHB domain-containing protein.
      
 0.403
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.