STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PKT5_AMBTCUncharacterized protein. (237 aa)    
Predicted Functional Partners:
U5DG00_AMBTC
Uncharacterized protein.
  
 
 0.715
W1NLN7_AMBTC
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.690
W1PID0_AMBTC
Sm domain-containing protein.
    
  0.688
W1PZJ3_AMBTC
Small nuclear ribonucleoprotein G.
    
  0.679
W1NHH9_AMBTC
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.678
U5CZT5_AMBTC
RPOLD domain-containing protein.
   
 
 0.632
U5DA74_AMBTC
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
  0.608
U5D9H7_AMBTC
Small nuclear ribonucleoprotein Sm D2.
    
  0.596
W1PTS5_AMBTC
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.592
W1PP24_AMBTC
MIF4G domain-containing protein.
    
  0.586
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.