STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PP05_AMBTCUncharacterized protein. (549 aa)    
Predicted Functional Partners:
W1PXX5_AMBTC
WD_REPEATS_REGION domain-containing protein.
    
 0.962
W1PLE5_AMBTC
Uncharacterized protein.
     
 0.950
W1NK52_AMBTC
CPSF_A domain-containing protein.
    
 0.924
W1NI32_AMBTC
WD_REPEATS_REGION domain-containing protein.
    
  0.904
W1NMV8_AMBTC
Uncharacterized protein.
     
 0.901
W1NUM2_AMBTC
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.857
W1PVI7_AMBTC
RING-type domain-containing protein.
    
 0.808
W1NG25_AMBTC
Uncharacterized protein.
   
 0.783
W1NLR6_AMBTC
DDA1 domain-containing protein.
    
  0.712
W1NY84_AMBTC
PCI domain-containing protein.
    
 0.695
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.