STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PPY3_AMBTCUncharacterized protein; Belongs to the DEAD box helicase family. (504 aa)    
Predicted Functional Partners:
W1P1X0_AMBTC
Uncharacterized protein.
   
 0.973
U5DCV4_AMBTC
RRM domain-containing protein.
   
 
 0.967
W1NTI9_AMBTC
Uncharacterized protein.
   
 
 0.962
U5CMI3_AMBTC
Uncharacterized protein.
 
 
 0.958
U5D0D2_AMBTC
Uncharacterized protein.
   
 0.955
U5D3A8_AMBTC
Sas10 domain-containing protein.
   
 0.955
W1PMH4_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 0.941
W1PWG6_AMBTC
Uncharacterized protein.
   
 
 0.935
W1NGL8_AMBTC
WD_REPEATS_REGION domain-containing protein.
   
 0.914
W1NN93_AMBTC
Uncharacterized protein.
   
 0.912
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.