STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W1PQA8_AMBTCChalcone-flavonone isomerase family protein; Belongs to the chalcone isomerase family. (221 aa)    
Predicted Functional Partners:
W1NZ07_AMBTC
Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
   
 0.932
U5D0H5_AMBTC
Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
   
 0.930
W1PZL1_AMBTC
Fe2OG dioxygenase domain-containing protein.
   
 0.913
W1Q0L4_AMBTC
Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
   
 0.913
W1NGS0_AMBTC
Uncharacterized protein.
   
 0.909
W1NGV0_AMBTC
Epimerase domain-containing protein.
   
 0.909
W1NHN2_AMBTC
Epimerase domain-containing protein.
   
 0.909
U5DFC9_AMBTC
Chal_sti_synt_N domain-containing protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.
     
 0.905
W1NXJ5_AMBTC
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
 
 0.903
Your Current Organism:
Amborella trichopoda
NCBI taxonomy Id: 13333
Other names: A. trichopoda, Amborella trichopoda Baill.
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